Author: Paul van der Laken

IBM’s Watson for Oncology: A Biased and Unproven Recommendation System in Cancer Treatment?

IBM’s Watson for Oncology: A Biased and Unproven Recommendation System in Cancer Treatment?

The below reiterates and summarizes this Stat article.

Recently, I addressed how bias may slip into Machine Learning applications and this weekend I came across another real-life example: IBM’s Watson, specifically Watson for Oncology. With a single machine, IBM intended to tackle humanity’s most vexing diseases and revolutionize medicine and they quickly zeroed in on a high-profile target: cancer.

However, three years later now, a STAT investigation has found that the supercomputer isn’t living up to the lofty expectations IBM created for it. IBM claims that, through Artificial Intelligence, Watson for Oncology can generate new insights and identify “new approaches” to cancer care. However, the STAT investigation (video below) concludes that the system doesn’t create new knowledge and is artificially intelligent only in the most rudimentary sense of the term. Similarly, cancer specialists using the product argue Watson is still in its “toddler stage” when it comes to oncology.

Let’s start with the positive side. For specific treatments, Watson can scan academic literature, immediately providing the “best data” about a treatment — survival rates, for example — thereby relieving doctors of tedious literature searches. Due to this transparency, Watson may level the hierarchy commonly found in hospital settings, by holding (senior) doctors accountable to the data and empowering junior physicians to back up their arguments. Furthermore, Watson’s information may empower patients as they can be offered a comprehensive packet of treatment options, including potential treatment plans along with relevant scientific articles. Patients can do their own research about these treatments, and maybe even disagree with the doctor about the right course of action.

Although study results demonstrate that Watson saves doctors time and can have a high concordance rate with their treatment recommendations, much more research is needed. The studies were all conference abstracts, which haven’t been published in peer-reviewed journals — and all but one was either conducted by a paying customer or included IBM staff on the author list, or both. More importantly, IBM has failed to exposed Watson for Oncology to critical review by outside scientists nor have they conducted clinical trials to assess its effectiveness. It would be very interesting to examine whether Watson’s implementation is actually saving lives or making healthcare more efficient/effective.

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IBM Watson Health
Such validation is especially necessary because several issues are identified. First, the actual capabilities of Watson for Oncology are not well-understood by the public, and even by some of the hospitals that use it. It’s taken nearly six years of painstaking work by data engineers and doctors to train Watson in just seven types of cancer, and keep the system updated with the latest knowledge. Moreover, because of the complexity of the underlying machine learning algorithms, the recommendations Watson puts out are a black box, and Watson can not provide the specific reasons for picking treatment A over treatment B.

Second, the system is essentially Memorial Sloan Kettering in a portable box. IBM celebrates Memorial Sloan Kettering’s role as the only trainer of Watson. After all, who better to educate the system than doctors at one of the world’s most renowned cancer hospitals? However, doctors claim that Memorial Sloan Kettering’s training has caused bias in the system, because the treatment recommendations it puts into Watson don’t always comport with the practices of doctors elsewhere in the world. When users ask Watson for advice, the system also searches published literature — some of which is curated by Memorial Sloan Kettering — to provide relevant studies and background information to support its recommendation. But the recommendation itself is derived from the training provided by the hospital’s doctors, not the outside literature.

 

Doctors at Memorial Sloan Kettering acknowledged their influence on Watson. “We are not at all hesitant about inserting our bias, because I think our bias is based on the next best thing to prospective randomized trials, which is having a vast amount of experience,” said Dr. Andrew Seidman, one of the hospital’s lead trainers of Watson. “So it’s a very unapologetic bias.

However, this bias causes serious problems when Watson for Oncology is implemented in other countries/hospitals. The generally affluent population treated at Memorial Sloan Kettering doesn’t reflect the diversity of people around the world. According to Martijn van Oijen, an epidemiologist and associate professor at Academic Medical Center in the Netherlands, Watson has not been implemented in because of country level differences in treatment approaches. Similarly, oncologists at one hospital in Denmark said they have dropped implementation altogether after finding that local doctors agreed with Watson in only about 33 percent of cases. Different problems occurred in South Korea, where researchers reported that the treatment Watson most often recommended for breast cancer patients simply wasn’t covered by their national insurance system.

Kris, the lead trainer at Memorial Sloan Kettering, says nobody wants to hear the problems. “All they want to hear is that Watson is the answer. And it always has the right answer, and you get it right away, and it will be cheaper. But like anything else, it’s kind of human.

 

 

AI at MIT (2010/2015): Part 1 – Introduction

AI at MIT (2010/2015): Part 1 – Introduction

Massachusetts Institute of Technology (MIT) hosts their entire 2010 course on artificial intelligence / machine learning by Professor Patrick Winston on YouTube. Although some parts seem already kind of dated seven years later, the videos on several evolving topics (e.g., Neural Networks) have been updated in the fall of 2015. The tutorial assignments you can find at the course website. Requirements for the course include experience with Python programming and an understanding of search algorithms (depth-first, breadth-first, uniform-cost, A*), basic probability, state estimation, the chain rule, partial derivatives, and dot products.

Below is the first, introductory lecture, which provides a short introduction to the history and concept of artificial intelligence:
AI is about algorithms enabled by constraints exposed by representations that support models targeted at loops that tie together thinking, perception and action.

Where to look for your next job? An Interactive Map of the US Job Market

Where to look for your next job? An Interactive Map of the US Job Market

The people at Predictive Talent, Inc. took a sample of 23.4 million job postings from 5,200+ job boards and 1,800+ cities around the US.  They classified these jobs using the BLS Standard Occupational Classification tree and identified their primary work locations, primary job roles, estimated salaries, and 17 other job search-related characteristics. Next, they calculated five metrics for each role and city in order to identify the 123 biggest job shortages in the US:

  • Monthly Demand (#): How many people are companies hiring every month? This is simply the number of unique jobs posted every month.
  • Unmet Demand (%): What percentage of jobs did companies have a hard time filling? Details aside, basically, if a company re-posts the same job every week for 6 weeks, one may assume that they couldn’t find someone for the first 5 weeks.
  • Salary ($): What’s the estimated salary for these jobs near this city? Using 145,000+ data points from the federal government and proprietary sources, along with salary information parsed from jobs themselves, they estimated the median salary for similar jobs within 100 miles of the city.
  • Delight (#): On a scale of 1 (least) to 10 (most delight), how easy should the job search be for the average job-seeker? This is basically the opposite of Agony.

The end result is this amazing map of the job market in the U.S, which you can interactively explore here to see where you could best start your next job hunt.

Video: Bias in Machine Learning

Video: Bias in Machine Learning

Mainstream media have caught onto the difficulties of machine learning. Most saliently, they just love to report how AI and bots can be as racist, discriminatory, or biased as humans. Some examples:

Instead of arguing to shut down all bots, I would prefer news outlets to to explain what’s really happening. However, this can be quite difficult and complex, especially when the audience has no knowledge of machine learning. Fortunately, I found the video below, where some people at Google provide a really good laymen explanation as to how bias slips into our machine learning models. It covers interaction bias (where the human-machine interactions bias the learner)latent bias (where unobserved patterns in the learning data cause bias), and selection bias (where the selected learning sample isn’t representative of the population). Can you try and figure out which one(s) apply to the news articles above?

 

Writing your thesis with R Markdown

Writing your thesis with R Markdown

Markdown is a great tool for integrating data analysis and report writing. Rosanna van Hespen wrote a great five-blog guide on how to write your thesis in R Markdown:

  1. Getting started
  2. Text, Citations, & Equations
  3. Figures, Code, & Tables
  4. Putting it all together
  5. Layout